BtaEX0023439 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53579761-53592946:-
Coord C1 exon
chr1:53592856-53592946
Coord A exon
chr1:53590177-53590566
Coord C2 exon
chr1:53579761-53579887
Length
390 bp
Sequences
Splice sites
3' ss Seq
AAAGTTATTTATTGCTATAGACT
3' ss Score
4
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAAAGAATTAGAAATGAATCAGATGAGGTCGAAGGTGGAGAATGAGAAAAGCCTGGTGGCTCAGCTTCAGAAGACGGTTAAAGAGTTCCAG
Seq A exon
ACTCAGATACAACTTTTGAAAGAAGAATTGGAAGCTGAAAGGACCACTCGAGCCAAGGTAGAGAGGGAGAGAGCTAACCTCATCCGAGAGCTGGAAGACATGAATGAGAGGCTGGAGGAGGCAGGAGGTGTCAGTTCGGCTCAGCTGGAGATAACTAAGAAACAAGAAACAAAATTCCAGAAGCTCCGCCGAGACCTGGAAGAGGCCACACTGCACTTTGAGGCAACCTCTGCCTCTTTGAAGAAGAGACACGCAGATAGCCTGGCTGAGCTGGAGAGCCAGGTAGAAAATTTACAACAGGTCAAGCAGACACTGGAAAAAGACAAGAGTGACCTAGAGCTCGAAGTGAACGATCTCCTGATCCATGTTGAACAGATGACCAGAGCTAAG
Seq C2 exon
GCTAATGCTGAGAAGCTTTGTAGTCTGTATGAGGAACGCTTGAAAGAAGCAAATGCAAAACTGGATGAAGTGACTCAATTAGCAAATGACGTGACAGCGCAGAAGACAAAGCTACGGAGTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399_MULTIEX1-3/8=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.346 C2=0.326
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(25.9=100),PF131661=AAA_13=FE(21.9=100),PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF087025=Fib_alpha=PD(14.7=13.1),PF131661=AAA_13=PD(51.1=53.8),PF0157614=Myosin_tail_1=FE(15.0=100),PF0003816=Filament=PU(19.9=24.6)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(26.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAATCAGATGAGGTCGAAGGTG
R:
CATTCTCACTCCGTAGCTTTGTCT
Band lengths:
206-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development