GgaEX6003905 @ galGal3
Exon Skipping
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90791505-90794502:-
Coord C1 exon
chr1:90794412-90794502
Coord A exon
chr1:90792918-90793307
Coord C2 exon
chr1:90791505-90791631
Length
390 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTTCTCTTTGATAGGCT
3' ss Score
9.47
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAAAGAGTTTGAAATGAGCCAATTGAATTCCAAGATAGAAGATGAACAAGCTATTGTAATGCAGCTGCAGAAGAAGATAAAGGAACTACAG
Seq A exon
GCTCGTATAGAAGAGCTGGAAGAGGAGCTGGAAGCAGAAAGAGCTGCTCGAGCCAAGGTGGAAAAGCAGAGATCAGATTTGGCCCGAGAGCTGGAGGAATTAAGTGAGCGGCTTGAAGAGGCTGGGGGTGCCACTGCTGCCCAGCTGGAGATGAACAAGAAACGTGAAGCTGAGTTCCTGAAGCTGCGGCGTGACCTCGAGGAGGCCACGCTGCACTATGAAGCCACAGCTGCTGCTCTGAGGAAGAAGCATGCGGACAGCGTGGCTGAGATGGGGGAGCAGCTGGACAACCTGCAGCGCGTCAAGCAGAAACTGGAAAAGGAGAAAAGCGAGCTGAAAATGGAAGTGGATGATCTGACATCCAACATGGAGCAAACGGTTAAGGGAAAA
Seq C2 exon
GCAAATGCAGAAAAACTTTGTCGCACTTATGAAGATCATCTTAATGAGACAAAAACTAAACTGGATGAAATGACTCGCCTCATGAATGACCTCACTACTCAAAAGACAAAACTCCAGAGTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.708 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF0157614=Myosin_tail_1=FE(15.0=100),PF0003816=Filament=PU(14.2=26.2)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(17.5=100),PF0003816=Filament=PU(3.9=27.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTTGAAATGAGCCAATTGAA
R:
CATTCTCACTCTGGAGTTTTGTCT
Band lengths:
215-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]