DreEX6091852 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24956097-24957449:-
Coord C1 exon
chr11:24957359-24957449
Coord A exon
chr11:24956837-24957226
Coord C2 exon
chr11:24956097-24956223
Length
390 bp
Sequences
Splice sites
3' ss Seq
ATCTTCCACTGTGTTTTAAGGCT
3' ss Score
6.84
5' ss Seq
AAGGTGGAA
5' ss Score
0.93
Exon sequences
Seq C1 exon
GAAAGATTTTGAAATGAACCAGATCAGTTCAAAAATCGAAGATGACCAAGTGCTAATCATCCAGCTTCAAAAGAAGATCAAGGAACTGCAA
Seq A exon
GCTCGTATTGAGGAGCTTGAAGAGGAAATGGAAGCAGAGCGCTCTACCCGAGCCAAAATGGAGAAACATCGAAGCGATTCGTCCAAAGAGCTTGAAGAGCTCAGTGAGCGTCTCGAAGAAGCCGGAGGAGCCACATCGGCCCAAATTGAGATGAATAAGAAACGAGAGGCCGACTTTTTAAAACTACGCCGTGACCTTGAGGAGGCCATACTGCACCATGAGGCCATGACTGCCGCATTGCGCAAAAAGCATGCAGACAGCGTGGTTGAACTGAGTGAGCAGATTGACAGCCTTCAGCGAGTCAAACAGAAGCTGGAGAAGGAGAGAAGTGAGGCCAAGATGGAGGCCGATGACCTCACCTCCAATTTAGAGCAGCTGGCAAAGGGCAAG
Seq C2 exon
GCTACTGCTGAGAAAACCTGTCGCCTTTATGAAGACCAGATGAACGAGTCCAAAGCCAAAGTGGAGGAGCTCCAGAGGCAGCTCAGTGACACCAACACGCAGCGAGCCCGTGCTCAGGCTGAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-'32-38,'32-37,35-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.715 C2=0.930
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF0157614=Myosin_tail_1=FE(15.0=100),PF059116=DUF869=PU(31.4=36.9)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF059116=DUF869=FE(27.5=100),PF0003816=Filament=PU(24.2=69.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTTTGAAATGAACCAGATCAGT
R:
CTTTCAGCCTGAGCACGGG
Band lengths:
214-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]