HsaEX6077832 @ hg38
Exon Skipping
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34997083-34998421:+
Coord C1 exon
chr20:34997083-34997173
Coord A exon
chr20:34997251-34997640
Coord C2 exon
chr20:34998295-34998421
Length
390 bp
Sequences
Splice sites
3' ss Seq
GCCCCACGTGCCCACCCCAGGCT
3' ss Score
5.98
5' ss Seq
AAGGTGTCC
5' ss Score
3.24
Exon sequences
Seq C1 exon
GAAGGACTCCGAGCTGAGCCAGCTGAGCCTGCGGGTGGAAGACGAGCAGCTCTTGGGGGCCCAGATGCAGAAGAAGATCAAGGAGCTGCAG
Seq A exon
GCTCGGGCGGAGGAGCTGGAAGAGGAGCTGGAGGCAGAGCGGGCAGCCCGGGCCCGCGTGGAGAAGCAGCGTGCAGAGGCGGCGCGGGAGCTGGAGGAGCTGAGCGAGCGGCTGGAGGAGGCAGGCGGCGCATCCGCGGGGCAGCGCGAGGGCTGCCGCAAGCGGGAGGCGGAGCTGGGGAGGCTGCGGCGGGAGCTGGAGGAGGCGGCGCTGCGGCACGAGGCCACAGTGGCGGCACTGCGGCGCAAGCAGGCGGAGGGCGCGGCGGAGCTGGGGGAGCAGGTGGACAGCCTGCAGCGGGTGCGGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTGCGCATGGAGGTGGACGACCTGGCTGCCAACGTGGAGACTCTGACCCGCGCCAAG
Seq C2 exon
GCCAGTGCAGAGAAGCTGTGCCGGACCTATGAGGATCAGCTAAGCGAGGCCAAGATCAAGGTGGAGGAGCTGCAGCGGCAGCTGGCGGACGCAAGCACGCAGCGTGGGCGACTACAGACGGAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-'42-40,'42-39,43-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.508 C2=0.326
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF0157614=Myosin_tail_1=FE(15.0=100),PF0003816=Filament=PU(11.6=24.6)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGACTCCGAGCTGAGCC
R:
GCTTTCCGTCTGTAGTCGCC
Band lengths:
217-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains