BtaEX6066258 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64907192-64908774:+
Coord C1 exon
chr13:64907192-64907282
Coord A exon
chr13:64907364-64907753
Coord C2 exon
chr13:64908648-64908774
Length
390 bp
Sequences
Splice sites
3' ss Seq
GCCTGCCTGCCCGTCCCCAGGCT
3' ss Score
9.36
5' ss Seq
AAGGTGTCG
5' ss Score
2.88
Exon sequences
Seq C1 exon
GAAGGATTCGGAGCTGAGTCAGCTGAACCTGCGGGTGGAGGATGAGCAGCTCCTTGGAGCCCAGCTGCAGAAGAAGATCAAGGAGCTGCAG
Seq A exon
GCTCGGGCCGAGGAGCTGGAAGAGGAGCTGGAGGCTGAGCGGGCGGCCCGGGCCCGCGTGGAGAAGCAGCGGGCAGAGGCGGCCCGGGAGCTGGAGGAGCTGAGCGAGCGGCTGGAGGAGGCCGGCGGTGCGTCAGCCGGGCAGCGCGAGGGCTGCCGGAAGCGCGAAGCCGAGCTGGGCCGGCTGCGGCGGGAACTGGAGGAGGCGGCTCTGCGGCACGAGGCCACGGTGGCGGCCCTGCGGCGTAAGCAGGCGGACAGTGCGGCCGAGCTGGGCGAGCAGGTGGACAGCCTGCAGCGTGTGCGGCAGAAGCTGGAAAAGGAGAAGAGCGAGCTCCGCATGGAGGTGGACGATCTGAGCGCCAACGTGGAGACCCTGGCCCGCGGCAAG
Seq C2 exon
GCCAGTGCAGAGAAGCTGTGCCGGGCATATGAGGATCAGCTGAGTGAGGCCAAGATCAAGGTGGAGGAGCTACAGCGGCAGCTGGCAGACGCGAGCACCCAGCGTGGGCGGCTGCAAACCGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512-'37-35,'37-32,39-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.546 C2=0.326
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF0157614=Myosin_tail_1=FE(15.0=100),PF0003816=Filament=PU(11.7=24.6)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGATTCGGAGCTGAGTCA
R:
CACTCTCGGTTTGCAGCC
Band lengths:
218-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]