MmuEX6106223 @ mm10
Exon Skipping
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155629119-155630384:+
Coord C1 exon
chr2:155629119-155629209
Coord A exon
chr2:155629291-155629680
Coord C2 exon
chr2:155630258-155630384
Length
390 bp
Sequences
Splice sites
3' ss Seq
AGTCGGTACCATCTCCTTAGGCT
3' ss Score
6.19
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
GAAGGATTCGGAGCTGAGTCAGCTGAACCTGCGGGTGGAGGATGAGCAGCTCGTGGGGGTGCAGCTGCAGAAGAAGATCAAGGAGCTGCAG
Seq A exon
GCTAGGGCCGAGGAGCTGGAGGAGGAGCTGGAGGCGGAGCGAGCAGCCCGCGCCCGCGTGGAAAAGCAGCGAGCCGAGGCAGCGCGGGAGCTGGAGGAGCTGAGCGAGAGGCTGGAGGAGGCTGGCGGAGCTTCCGCGGGGCAGCGTGAGGGTTGCCGCAAGCGTGAGGCTGAGTTGGGCCGGCTGCGGCGGGAGCTGGAGGAGGCAGTTCTGAGGCACGAGGCCACTGTGGCTGCCCTGCGCCGCAAGCAGGCCGATAGCGCTGCAGAGCTGAGCGAGCAGGTGGACAGCCTGCAGCGCATCCGGCAGAAACTGGAAAAGGAGAAGAGCGAGCTGCGCATGGAGGTGGACGATCTGGGCGCCAGCGTGGAAACTCTGGCCCGTGGCAAG
Seq C2 exon
GCCAGTGCGGAAAAGCTGTGTCGGACCTATGAGGACCAGCTGAGCGAGGCCAAAATCAAAGTGGAGGAGCTGCAGCGACAGCTGGCCGACGCCAGCACCCAGCGGGGGCGGTTACAAACGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-'35-42,'35-31,36-42=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.492 C2=0.372
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF0157614=Myosin_tail_1=FE(15.0=100)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(11.6=60.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGATTCGGAGCTGAGTCA
R:
ATTCTCCGTTTGTAACCGCCC
Band lengths:
217-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types