GgaEX1037876 @ galGal4
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2947443-2948617:-
Coord C1 exon
chr20:2948527-2948617
Coord A exon
chr20:2947979-2948368
Coord C2 exon
chr20:2947443-2947569
Length
390 bp
Sequences
Splice sites
3' ss Seq
CCCCATCCTGTCCCTTCTAGGCT
3' ss Score
10.51
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GAAGGACTTTGAAATGAGTCAGCTGAACTCAAGGATTGAGGATCAGCAGGTGACTGAGGCCCAGCTGCAGAAGAAGATCAAGGAGCTCCAG
Seq A exon
GCTCGTATTGAGGAGCTGGAGGAGGAGCTGGAGGCTGAGCGTGCCGCTCGAGCCAAGGTGGAGAAGCAGCGGGCAGAAGTGTCCCGGGAGCTGGAGGAGCTGAGCGAGCGGCTGGAGGAGGCTGGAGGAGCGACGTCTGCACAGCTGGAGATGAACAAGAAGCGGGAGGTGGAATTCCTGAAGCTGAGGAGGGACCTGGAGGAGGCGACGCTGCAGCACGAGTCCACGGCGGCCGCTCTGCGGAAGAAACACGCGGACAGCGTGGCTGAGCTGAGCGAGCAGATCGACAACCTGCAGCGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGATGAAGATGGAGGTGGACGACCTGTCATCCAACATCGAATACCTCACCAAGAACAAG
Seq C2 exon
GCCAATGCTGAGAAGCTGTGCCGCACCTATGAGGACCAACTGAGCGAAGCCAAGTCCAAGGTGGATGAGCTGCAGCGGCAGCTGACTGATGTGAGCACACAGCGGGGCAGGCTGCAGACTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'30-28,'30-26,31-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.623 C2=0.674
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF0157614=Myosin_tail_1=FE(15.0=100),PF041569=IncA=PU(53.7=50.8)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF041569=IncA=FE(34.1=100),PF0003816=Filament=PU(12.5=65.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTTTGAAATGAGTCAGCTGA
R:
CATTCTCAGTCTGCAGCCTGC
Band lengths:
216-606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]