RnoEX6019872 @ rn6
Exon Skipping
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151145346-151146597:+
Coord C1 exon
chr3:151145346-151145436
Coord A exon
chr3:151145518-151145907
Coord C2 exon
chr3:151146471-151146597
Length
390 bp
Sequences
Splice sites
3' ss Seq
ACTCGGTACCATTTACTCAGGCG
3' ss Score
3.77
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
GAAGGATTCAGAGCTGAGTCAGCTGAGCCTGCGGGTGGAGGATGAGCAGCTCCTGGGGGCGCAGTTGCAGAAGAAGATCAAGGAGCTACAG
Seq A exon
GCGAGGGCTGAGGAGCTGGAGGAGGAGCTGGAGGCGGAGCGAGCAGCCCGTGCCCGTGTGGAAAAGCAGCGAGCTGAGGCAGCCCGAGAGCTGGAGGAGCTGAGTGAGAGGCTAGAGGAGGCTGGTGGAGCCTCTGCCGGGCAGCGTGAGGGTTGCCGCAAGCGTGAGGCTGAGTTGGGCCGACTGCGGCGGGAGCTGGAGGAGACAGTTCTGAGACACGAGGCCACTGTGGCTGCCCTGCGCCGCAAGCAGGCTGATAGCGCCGCAGAGTTGAGCGAGCAGGTAGACAGCCTCCAGCGGATCCGGCAGAAACTGGAGAAGGAAAAGAGTGAGCTGCGCATGGAGGTGGATGATCTGGGGGCCAGCGTGGAAACTCTGGCCCGTGGCAAG
Seq C2 exon
GCCAGTGCAGAGAAGCTGTGCCGGACCTATGAGGACCAGCTCAGCGAGGCCAAGATCAAAGTGGAGGAGCTGCAGCGGCAGCTGACTGACGCCAGCACCCAGCGGGGGCGGTTACAAACGGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-'30-33,'30-31,31-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.546 C2=0.395
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF0157614=Myosin_tail_1=FE(15.0=100)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(15.0=81.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGATTCAGAGCTGAGTCAG
R:
GTTCTCCGTTTGTAACCGCCC
Band lengths:
217-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]