RnoEX6056899 @ rn6
Exon Skipping
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54251942-54261158:-
Coord C1 exon
chr11:54261068-54261158
Coord A exon
chr11:54258658-54259047
Coord C2 exon
chr11:54251942-54252068
Length
390 bp
Sequences
Splice sites
3' ss Seq
AACATTATTTATTCCCCCAGACT
3' ss Score
7.21
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
GAAAGAATTTGAAATGGGTCAGATGAATTCAAAAGTGGAGAATGAGAAGAACCTGGTGTCTCAGCTTCAGAAGACGGTGAAAGAGCTCCAG
Seq A exon
ACTCAAATATTAAATTTGAAGGAGGAGCTGGAAAGCGAAAGGACCATTAGAGCCAAGGTGGAAAGAGAGAGAGGTGACCTCGCTCAAGACCTAGAAGATTTGAATGAGAGGCTGGAGGAGGCAGGGGGGACCAGTTTGGCTCAGATGGAGATAACTAGGCAACAGGAAGCAAGATTTCAGAAGCTTCGCCATGACATGGAAGAGACCACACGACACTTTGAGGCAACTTCTGTCTCTCTGAAAAGGAGACATGCAGAGAACGTGGCTGAGCTTGAGGGCCAGGTAGAACATTTACAGCAGGTCAGGCAAGTGCTCGATCAAGAGAAGAGTGACCTGCAGCTTCAAGTGGATGACCTCCTGACACGTGTTGATCAGATGGCCAGAGCTAAG
Seq C2 exon
GCAAATGCTGAGAAACTCTGTGGTCTGTATGAGAGGCGCCTGAATGAAGCAAACACAAAACTGGATGAGGCGACTCAGTTAGCAAAGGATCTGACGTCACAGAGGACAAAGCTTCAGAACGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038-'32-34,'32-32,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.515 C2=0.419
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF0157614=Myosin_tail_1=FE(15.2=100)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATTTGAAATGGGTCAGATGAA
R:
ACTCTCGTTCTGAAGCTTTGTCC
Band lengths:
215-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]