MmuEX6062741 @ mm10
Exon Skipping
Gene
ENSMUSG00000092009 | Myh15
Description
myosin, heavy chain 15 [Source:MGI Symbol;Acc:MGI:3643515]
Coordinates
chr16:49142916-49153194:+
Coord C1 exon
chr16:49142916-49143006
Coord A exon
chr16:49145043-49145432
Coord C2 exon
chr16:49153068-49153194
Length
390 bp
Sequences
Splice sites
3' ss Seq
ATAATTATTTATTTTCCCAGACT
3' ss Score
5.96
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GAAGGAGTTTGAAATGGGTCAGATGAATTCAAAAGTGGAGAATGAGAAGAACCAGGTGTCTCAGCTTCAGAAGATGGTGAAAGAGCTTCAG
Seq A exon
ACTCATATATTAAATTTGAAGGAGGAACTGGAAAGTGAAAGGACCATTAGAGCCAAGGTGGAAAGAGAGAAAGGTGACCTTGTCCAAGACCTAGAAGATTTGAATGAGAGGCTTGAGGAGGCAGGGGGGACCAGTTTGGCTCAGATGGAGATAACTAAGCAACAGGAAGCAAGATTTCAGAAGCTTCACCATGACATGGAAGAGACCACAAGACACTTTGAGGCAACCTCTGCCTCTTTGAAAAAGAGACACGCAGAGAACCTGGCTGAGCTTGAGGGCCAGGTAGAACATTTACAGCAGGTCAGGCTGGTGCTAGAACAAGACAAGAGTGACCTGCAGCTTCAAGTGGATGACCTCCTGAACCGCGTTGATCAGATGGCCAGAGCTAAG
Seq C2 exon
GCAAATGCTGAGAAACTCTGTGGTCTGTATGAGAGGCGCTTGAATGAAGCAAATACAAAACTGGATGAGGTGACTCAGTTGGCACATGATCTGACGACACAGAAAACAAAGCTACAGAGTGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092009-'28-33,'28-29,29-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=0.592 C2=0.442
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(26.8=100),PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF087025=Fib_alpha=PD(13.4=11.5),PF0157614=Myosin_tail_1=FE(15.0=100)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTTTGAAATGGGTCAGATGA
R:
CACTCTCACTCTGTAGCTTTGT
Band lengths:
216-606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types