HsaEX6063677 @ hg38
Exon Skipping
Gene
ENSG00000165695 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr9:132827307-132828084:-
Coord C1 exon
chr9:132828013-132828084
Coord A exon
chr9:132827849-132827905
Coord C2 exon
chr9:132827307-132827435
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTGGGCACCCACAGAGG
3' ss Score
5.98
5' ss Seq
AGGGTACAT
5' ss Score
3.77
Exon sequences
Seq C1 exon
TTGTGCTGAGTGCTCCAGACACGGTCCTGATCGAGAGAAACTTGGGGAAGAGAATCGACCCTCAAACTGGAG
Seq A exon
AGGGACACGAGGAAGGCTGCCACAGGCTGGGCTCTGAGCTGGAAGACACTGGCAAGG
Seq C2 exon
ACATGGGATACCTGAGACTCAGTTTTCTTATCTGTACTTGAGGATGAAAATACCAACCTAATGGGTGATGGGATGGCTGTGAAGATGAAATGGGAGTCTGCAGGTGCCTATCAGAGTGGCTGGCACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165695-'15-19,'15-18,16-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.550 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(13.6=100)
A:
PF0040617=ADK=FE(9.7=100)
C2:
NA
Main Inclusion Isoform:
ENST00000298545fB31577
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACGGTCCTGATCGAGAG
R:
CTTCACAGCCATCCCATCACC
Band lengths:
140-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains