GgaEX0020073 @ galGal3
Exon Skipping
Gene
ENSGALG00000013404 | E1BT67_CHICK
Description
NA
Coordinates
chr17:7328808-7331306:-
Coord C1 exon
chr17:7331225-7331306
Coord A exon
chr17:7329527-7329598
Coord C2 exon
chr17:7328808-7329005
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTGGCGGGGGTCCAGTTG
3' ss Score
1.27
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GGCTGGATTTTGGAAGGCTTCCCTGAAAATCAGGAACAGGCACGGCTGCTGCAATCAGCTGGCATCATTCCGAGGCATGTTG
Seq A exon
TTGTGCTCTATGCTGCAGACACTACGCTGATTGAGCGGAACAGTGGAAAGAGGCTCGATCCCCTCACAGAAG
Seq C2 exon
AGGTGTACCATACGACCTTTGACTGGCCAAATGATGTGCAGATACAGCAACGTTTGGTGAAACCAGATCTGTCTGAGGAGGAGATGTCAAAACAACTGCTGGAATACCATAGGAACTTCCCCGGGGTGTTCCAGATCTACCAAAAAATTCTGAGATCAATCAATGCAGACCAGCCTTGTGTGGATGTCATATCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(15.4=100)
A:
PF0040617=ADK=FE(13.7=100)
C2:
PF0040617=ADK=PD(28.6=74.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCTGGCATCATTCCGAG
R:
TGGTAGATCTGGAACACCCCG
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event