RnoEX0008264 @ rn6
Exon Skipping
Gene
ENSRNOG00000012761 | Ak8
Description
adenylate kinase 8 [Source:RGD Symbol;Acc:1303144]
Coordinates
chr3:7315046-7316907:+
Coord C1 exon
chr3:7315046-7315127
Coord A exon
chr3:7315610-7315681
Coord C2 exon
chr3:7316707-7316907
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTTCTCTATTCAGTCG
3' ss Score
8.72
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GGCTGGATCCTGGATGGCATCCCCGAGAGGCGGGAGCAGGCTCTGATGATCCAGACCCTGGGACTGGCACCCAAGCACGTCA
Seq A exon
TCGTGCTTAGCGCTCCAGACTCCGTCCTGATCGAGAGAAATGTGGGGAAACGGATTGATCCTGTCACTGGAG
Seq C2 exon
AGATCTATCACACCACCTTCGACTGGCCCCCTGAGCTTGAAATACAGAACAGGCTGATACAGCCAGAAGGCATCTCGGAGATAGACACAGCGAAGAAGCTGCTGGAATACCACAGGCACATCATCAGGATTCTTCCTTCCTACCCTAAAATCCTGAAAACTATCAGCTCAGACCAGCCATGTGTGGATGTCTTCTACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012761-'15-20,'15-19,16-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(15.3=100)
A:
PF0040617=ADK=FE(13.6=100)
C2:
PF0040617=ADK=PD(29.0=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGATGATCCAGACCCT
R:
TCCTGATGATGTGCCTGTGGT
Band lengths:
173-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]