MmuEX6100031 @ mm10
Exon Skipping
Gene
ENSMUSG00000026807 | Ak8
Description
adenylate kinase 8 [Source:MGI Symbol;Acc:MGI:1916120]
Coordinates
chr2:28733807-28735703:+
Coord C1 exon
chr2:28733807-28733888
Coord A exon
chr2:28734374-28734445
Coord C2 exon
chr2:28735503-28735703
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTTCTCTGCCCAGTTG
3' ss Score
8.82
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
GGCTGGATCCTGGACGGCATCCCTGAGAGGCGGGAGCAGGCTCTGATGATCCAGACCCTGGGGCTGGCGCCCAAGCACGTCA
Seq A exon
TTGTGCTTAATGCTCCAGACACTGTCCTGATCGAGAGAAATGTGGGCAAGCGGATCGACCCTGTCACCGGAG
Seq C2 exon
AGATCTATCACACCACCTTCGACTGGCCCCCTGAGCCTGAAATACAGAACAGGCTGAGACAGCCGGAGGGCATCTCGGAGATCGAAACGGCGAAGAAGCTGCTGGAGTACCACAGGCACATCATCAGGATTCTTCCTTCTTACCCAAAAATCCTGAAAACCATCAGCTCAGACCAGCCGTGTGTGGATGTCTTCTACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026807-'14-13,'14-12,16-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF132381=AAA_18=FE(18.2=100)
A:
PF132381=AAA_18=FE(16.2=100)
C2:
PF0040617=ADK=PD(29.0=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGATGATCCAGACCCT
R:
TGATGTGCCTGTGGTACTCCA
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types