GgaEX0020073 @ galGal4
Exon Skipping
Gene
ENSGALG00000013404 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr17:6691638-6697014:-
Coord C1 exon
chr17:6696933-6697014
Coord A exon
chr17:6695235-6695306
Coord C2 exon
chr17:6691638-6691769
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTGGCGGGGGTCCAGTTG
3' ss Score
1.27
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GGCTGGATTTTGGAAGGCTTCCCTGAAAATCAGGAACAGGCACGGCTGCTGCAATCAGCTGGCATCATTCCGAGGCATGTTG
Seq A exon
TTGTGCTCTATGCTGCAGACACTACGCTGATTGAGCGGAACAGTGGAAAGAGGCTCGATCCCCTCACAGAAG
Seq C2 exon
CTCTTACCTATGTCCAAACCCAGCACCGATCAGCTGCCCCTTTTACTCCACGTATTCTCTTTTGTGGCCCCCCAGGCAGTGGGAAGAGCCTGCAGGCAGCACTAATAGCTCAGAAATACAGCGTTGTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(15.4=100)
A:
PF0040617=ADK=FE(13.7=100)
C2:
PF0040617=ADK=PU(22.4=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATCAGGAACAGGCACGGC
R:
TGAGCTATTAGTGCTGCCTGC
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]