GgaEX0020074 @ galGal4
Exon Skipping
Gene
ENSGALG00000013404 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr17:6691638-6697014:-
Coord C1 exon
chr17:6696933-6697014
Coord A exon
chr17:6694516-6694713
Coord C2 exon
chr17:6691638-6691769
Length
198 bp
Sequences
Splice sites
3' ss Seq
AATCACTGTCTGACTTCCAGAGG
3' ss Score
6.58
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGCTGGATTTTGGAAGGCTTCCCTGAAAATCAGGAACAGGCACGGCTGCTGCAATCAGCTGGCATCATTCCGAGGCATGTTG
Seq A exon
AGGTGTACCATACGACCTTTGACTGGCCAAATGATGTGCAGATACAGCAACGTTTGGTGAAACCAGATCTGTCTGAGGAGGAGATGTCAAAACAACTGCTGGAATACCATAGGAACTTCCCCGGGGTGTTCCAGATCTACCAAAAAATTCTGAGATCAATCAATGCAGACCAGCCTTGTGTGGATGTCATATCACAAG
Seq C2 exon
CTCTTACCTATGTCCAAACCCAGCACCGATCAGCTGCCCCTTTTACTCCACGTATTCTCTTTTGTGGCCCCCCAGGCAGTGGGAAGAGCCTGCAGGCAGCACTAATAGCTCAGAAATACAGCGTTGTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(15.4=100)
A:
PF0040617=ADK=PD(28.6=74.6)
C2:
PF0040617=ADK=PU(22.4=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGATTTTGGAAGGCTTC
R:
TGACAACGCTGTATTTCTGAGCT
Band lengths:
211-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]