DreEX6011373 @ danRer10
Exon Skipping
Gene
ENSDARG00000030961 | ak8
Description
adenylate kinase 8 [Source:ZFIN;Acc:ZDB-GENE-050522-275]
Coordinates
chr5:29084163-29090636:+
Coord C1 exon
chr5:29084163-29084234
Coord A exon
chr5:29084662-29084865
Coord C2 exon
chr5:29090505-29090636
Length
204 bp
Sequences
Splice sites
3' ss Seq
GATTCTTTTCATTGTTTCAGATG
3' ss Score
10.25
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TGATGCTGGAAGCTCCTGATGTCGTCCTGATTGAAAGGAGCTCAGGCAAGAGGATAGACCCTGTCACAGGAG
Seq A exon
ATGTATATCATGTCACCTTCATGTGGCCTGAGAGTGAAGAGGTTGCACGGCGTTTAGAAACACCCAGGACTCTTATGCCAGTTCAAGTTATGAGCCAAAAGCTGCAGAAATACCACACAGAAGCTCACGCTCTGAAGCGCACCTACCACAACTGCCTGAAGATCATCAATGCTGACCAGCCTCATGTAGATGTATTTTCACAAG
Seq C2 exon
TGCTGAACTTCATCTGTACTCCACGTCACTCTCCCTCACCCTACACTCCCAGAATCCTGCTGTTTGGACCACCAGGTGCAGGAAAAAGTCTGCAGGCAAAACTAATTGCTCAGAAATACGGCATCATCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030961-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(13.6=100),PF051919=ADK_lid=PU(28.0=28.0)
A:
PF0040617=ADK=PD(29.5=75.4),PF051919=ADK_lid=PD(68.0=24.6)
C2:
PF0040617=ADK=PU(13.3=53.3)
Main Skipping Isoform:
ENSDART00000043096fB1117
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCTGGAAGCTCCTGATG
R:
TGTTGATGATGCCGTATTTCTGA
Band lengths:
204-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]