MmuEX6100030 @ mm10
Exon Skipping
Gene
ENSMUSG00000026807 | Ak8
Description
adenylate kinase 8 [Source:MGI Symbol;Acc:MGI:1916120]
Coordinates
chr2:28734374-28739664:+
Coord C1 exon
chr2:28734374-28734445
Coord A exon
chr2:28735503-28735703
Coord C2 exon
chr2:28739533-28739664
Length
201 bp
Sequences
Splice sites
3' ss Seq
CCGTGCCTCTCCCGGTGCAGAGA
3' ss Score
8.37
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
TTGTGCTTAATGCTCCAGACACTGTCCTGATCGAGAGAAATGTGGGCAAGCGGATCGACCCTGTCACCGGAG
Seq A exon
AGATCTATCACACCACCTTCGACTGGCCCCCTGAGCCTGAAATACAGAACAGGCTGAGACAGCCGGAGGGCATCTCGGAGATCGAAACGGCGAAGAAGCTGCTGGAGTACCACAGGCACATCATCAGGATTCTTCCTTCTTACCCAAAAATCCTGAAAACCATCAGCTCAGACCAGCCGTGTGTGGATGTCTTCTACCAGG
Seq C2 exon
CTCTGACCTATGTCCAATCTGGCCATCGATGCAATGCCCCATTCACCCCCAAGGTGCTGCTGTGTGGGCCGTTGGGCAGCGGGAAGAGACTGCAGGCTACCCTTCTGGCCCAGAAATATGGCCTTGTAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026807-'13-14,'13-13,17-14=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.000
Domain overlap (PFAM):
C1:
PF132381=AAA_18=FE(16.2=100)
A:
PF0040617=ADK=PD(29.0=75.0)
C2:
PF0040617=ADK=PU(13.3=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCTTAATGCTCCAGACACT
R:
TGTTTACAAGGCCATATTTCTGGG
Band lengths:
204-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types