RnoEX6016177 @ rn6
Exon Skipping
Gene
ENSRNOG00000012761 | Ak8
Description
adenylate kinase 8 [Source:RGD Symbol;Acc:1303144]
Coordinates
chr3:7315610-7320585:+
Coord C1 exon
chr3:7315610-7315681
Coord A exon
chr3:7316707-7316907
Coord C2 exon
chr3:7320454-7320585
Length
201 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCTCTCCCTGTGCAGAGA
3' ss Score
11.09
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TCGTGCTTAGCGCTCCAGACTCCGTCCTGATCGAGAGAAATGTGGGGAAACGGATTGATCCTGTCACTGGAG
Seq A exon
AGATCTATCACACCACCTTCGACTGGCCCCCTGAGCTTGAAATACAGAACAGGCTGATACAGCCAGAAGGCATCTCGGAGATAGACACAGCGAAGAAGCTGCTGGAATACCACAGGCACATCATCAGGATTCTTCCTTCCTACCCTAAAATCCTGAAAACTATCAGCTCAGACCAGCCATGTGTGGATGTCTTCTACCAGG
Seq C2 exon
CTCTGACCTACGTCCAATCTGGCCACCGATGTAATGCCCCGTTCACCCCCAAGGTGCTGCTGTGTGGGCCAATGGGCTGTGGGAAGAAACTGCAGGCTGCCCTTCTGTCCCAGAAATATGGCCTCGTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012761-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(13.6=100)
A:
PF0040617=ADK=PD(29.0=75.0)
C2:
PF0040617=ADK=PU(13.3=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGCTTAGCGCTCCAGA
R:
TGTTCACGAGGCCATATTTCTGG
Band lengths:
204-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]