GgaEX0020074 @ galGal3
Exon Skipping
Gene
ENSGALG00000013404 | E1BT67_CHICK
Description
NA
Coordinates
chr17:7325929-7329598:-
Coord C1 exon
chr17:7329527-7329598
Coord A exon
chr17:7328808-7329005
Coord C2 exon
chr17:7325929-7326060
Length
198 bp
Sequences
Splice sites
3' ss Seq
AATCACTGTCTGACTTCCAGAGG
3' ss Score
6.58
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TTGTGCTCTATGCTGCAGACACTACGCTGATTGAGCGGAACAGTGGAAAGAGGCTCGATCCCCTCACAGAAG
Seq A exon
AGGTGTACCATACGACCTTTGACTGGCCAAATGATGTGCAGATACAGCAACGTTTGGTGAAACCAGATCTGTCTGAGGAGGAGATGTCAAAACAACTGCTGGAATACCATAGGAACTTCCCCGGGGTGTTCCAGATCTACCAAAAAATTCTGAGATCAATCAATGCAGACCAGCCTTGTGTGGATGTCATATCACAAG
Seq C2 exon
CTCTTACCTATGTCCAAACCCAGCACCGATCAGCTGCCCCTTTTACTCCACGTATTCTCTTTTGTGGCCCCCCAGGCAGTGGGAAGAGCCTGCAGGCAGCACTAATAGCTCAGAAATACAGCGTTGTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(13.7=100)
A:
PF0040617=ADK=PD(28.6=74.6)
C2:
PF0040617=ADK=PU(20.7=53.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTCTATGCTGCAGACAC
R:
GTTGACAACGCTGTATTTCTGAGC
Band lengths:
202-400
Functional annotations
There are 0 annotated functions for this event