MmuEX6100031 @ mm9
Exon Skipping
Gene
ENSMUSG00000026807 | Ak8
Description
adenylate kinase 8 [Source:MGI Symbol;Acc:MGI:1916120]
Coordinates
chr2:28589327-28591223:+
Coord C1 exon
chr2:28589327-28589408
Coord A exon
chr2:28589894-28589965
Coord C2 exon
chr2:28591023-28591223
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTTCTCTGCCCAGTTG
3' ss Score
8.82
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
GGCTGGATCCTGGACGGCATCCCTGAGAGGCGGGAGCAGGCTCTGATGATCCAGACCCTGGGGCTGGCGCCCAAGCACGTCA
Seq A exon
TTGTGCTTAATGCTCCAGACACTGTCCTGATCGAGAGAAATGTGGGCAAGCGGATCGACCCTGTCACCGGAG
Seq C2 exon
AGATCTATCACACCACCTTCGACTGGCCCCCTGAGCCTGAAATACAGAACAGGCTGAGACAGCCGGAGGGCATCTCGGAGATCGAAACGGCGAAGAAGCTGCTGGAGTACCACAGGCACATCATCAGGATTCTTCCTTCTTACCCAAAAATCCTGAAAACCATCAGCTCAGACCAGCCGTGTGTGGATGTCTTCTACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026807-'8-10,'8-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(15.3=100)
A:
PF0040617=ADK=FE(13.6=100)
C2:
PF0040617=ADK=PD(29.0=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGATGATCCAGACCCT
R:
TGATGTGCCTGTGGTACTCCA
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: