HsaEX6063857 @ hg38
Exon Skipping
Gene
ENSG00000130635 | COL5A1
Description
collagen type V alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr9:134811339-134812502:+
Coord C1 exon
chr9:134811339-134811392
Coord A exon
chr9:134811492-134811599
Coord C2 exon
chr9:134812449-134812502
Length
108 bp
Sequences
Splice sites
3' ss Seq
GGCCGGTTATTTCCCTGCAGGGA
3' ss Score
8.75
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGTCCTCCTGGGCCTACAGGTCCTCAAGGCCCCATCGGACAGCCAGGCCCCTCT
Seq A exon
GGAGCTGACGGCGAGCCGGGGCCTCGGGGCCAGCAGGGCCTTTTCGGGCAGAAAGGTGATGAAGGTCCCAGAGGCTTTCCTGGACCCCCTGGGCCAGTGGGGCTGCAG
Seq C2 exon
GGTTTGCCAGGACCTCCAGGCGAGAAGGGTGAGACAGGAGACGTGGGCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130635-'99-84,'99-83,100-84=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.9=100)
A:
PF0139113=Collagen=PD(22.2=55.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCTGGGCCTACAG
R:
ATCTGGCCCACGTCTCCTG
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains