HsaEX6064961 @ hg19
Exon Skipping
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:30375]
Coordinates
chr12:7550860-7559448:-
Coord C1 exon
chr12:7559128-7559448
Coord A exon
chr12:7556131-7556451
Coord C2 exon
chr12:7550860-7551180
Length
321 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGACTTCATCCTAGATG
3' ss Score
7.02
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
ATAGTAGTGATCTTGAACTAAGGCTTGTAGGTGGAACTAACCGCTGTATGGGGAGAGTAGAGCTGAAAATCCAAGGAAGGTGGGGGACCGTATGCCACCATAAGTGGAACAATGCTGCAGCTGATGTCGTATGCAAGCAGTTGGGATGTGGAACCGCACTTCACTTCGCTGGCTTGCCTCATTTGCAGTCAGGGTCTGATGTTGTATGGCTTGATGGTGTCTCCTGCTCCGGTAATGAATCTTTTCTTTGGGACTGCAGACATTCCGGAACCGTCAATTTTGACTGTCTTCATCAAAACGATGTGTCTGTGATCTGCTCAG
Seq A exon
ATGGAGCAGATTTGGAACTGCGACTAGCAGATGGAAGTAACAATTGTTCAGGGAGAGTAGAGGTGAGAATTCATGAACAGTGGTGGACAATATGTGACCAGAACTGGAAGAATGAACAAGCCCTTGTGGTTTGTAAGCAGCTAGGATGTCCGTTCAGCGTCTTTGGCAGTCGTCGTGCTAAACCTAGTAATGAAGCTAGAGACATTTGGATAAACAGCATATCTTGCACTGGGAATGAGTCAGCTCTCTGGGACTGCACATATGATGGAAAAGCAAAGCGAACATGCTTCCGAAGATCAGATGCTGGAGTAATTTGTTCTG
Seq C2 exon
ATAAGGCAGATCTGGACCTAAGGCTTGTCGGGGCTCATAGCCCCTGTTATGGGAGATTGGAGGTGAAATACCAAGGAGAGTGGGGGACTGTGTGTCATGACAGATGGAGCACAAGGAATGCAGCTGTTGTTTGTAAACAATTGGGATGTGGAAAGCCTTTGCATGTGTTTGGTATGACCTATTTTAAAGAAGCATCAGGACCTATTTGGCTGGATGACGTTTCTTGCATTGGAAATGAGTCAAATATCTGGGACTGTGAACACAGTGGATGGGGAAAGCATAATTGTGTACACAGAGAGGATGTGATTGTAACCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
PF0053013=SRCR=WD(100=90.7)
C2:
PF0053013=SRCR=WD(100=90.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGAACAATGCTGCAGCT
R:
CAACAGCTGCATTCCTTGTGC
Band lengths:
349-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)