HsaEX6065387 @ hg19
Exon Skipping
Gene
ENSG00000139144 | PIK3C2G
Description
phosphoinositide-3-kinase, class 2, gamma polypeptide [Source:HGNC Symbol;Acc:8973]
Coordinates
chr12:18473896-18491482:+
Coord C1 exon
chr12:18473896-18473966
Coord A exon
chr12:18477969-18478032
Coord C2 exon
chr12:18491360-18491482
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTCTATTTTTTATTTTCCAGACA
3' ss Score
9.67
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
CATGAAGAGGACCACAGTCAGTTTTATCTGAATCAACTTCTAGAATTTATGCATATTTGGAAAGTATCCAG
Seq A exon
ACAATGTCTCTTAACACTCATCAGAAAATATGACTTCCACCTGAAATACCTATTGAAAACCCAG
Seq C2 exon
GAAAACGTGTATAATATTATTGAAGAAGTTAAAAAAATATGCAGTGTTCTAGGGTGTGTGGAAACCAAACAAATTACAGATGCAGTAAATGAACTAAGTCTAATTCTTCAGAGAAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027315=Serum_albumin=FE(16.5=100)
A:
PF0027315=Serum_albumin=FE(15.1=100)
C2:
PF0027315=Serum_albumin=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAAGAGGACCACAGTCAGT
R:
CCACACACCCTAGAACACTGC
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)