HsaEX6065387 @ hg38
Exon Skipping
Gene
ENSG00000139144 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr12:18320962-18338548:+
Coord C1 exon
chr12:18320962-18321032
Coord A exon
chr12:18325035-18325098
Coord C2 exon
chr12:18338426-18338548
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTCTATTTTTTATTTTCCAGACA
3' ss Score
9.67
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
CATGAAGAGGACCACAGTCAGTTTTATCTGAATCAACTTCTAGAATTTATGCATATTTGGAAAGTATCCAG
Seq A exon
ACAATGTCTCTTAACACTCATCAGAAAATATGACTTCCACCTGAAATACCTATTGAAAACCCAG
Seq C2 exon
GAAAACGTGTATAATATTATTGAAGAAGTTAAAAAAATATGCAGTGTTCTAGGGTGTGTGGAAACCAAACAAATTACAGATGCAGTAAATGAACTAAGTCTAATTCTTCAGAGAAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAAGAGGACCACAGTCAGT
R:
CCACACACCCTAGAACACTGC
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains