GgaEX7000650 @ galGal4
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64161474-64168736:+
Coord C1 exon
chr1:64161474-64161544
Coord A exon
chr1:64166804-64166867
Coord C2 exon
chr1:64168611-64168736
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTCTAATTTCCAGACA
3' ss Score
9.01
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
CACGAGGATGACCAAGGACGGTTCAGTGTGAATGAGCTGTTAGAATATACTTGTGCTTGGAGACTGACTCG
Seq A exon
ACAGAACCTTTTCGCAGCTCTTAGGAAATACAGAGGTCAAGTGGAGCACCTTTTGCAAAATGAG
Seq C2 exon
CCATACAAAGTTGATTATGTGATTGAAGTAGCTAAAGCAATCTGCAGTGTCCTCTGCTTCGTGGAGACCAGACAAATTACCAGTGCAGTCAAGAAACTACATGCAGTGCCGTTGGTGAAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGACCAAGGACGGTTCA
R:
TTTGTCTGGTCTCCACGAAGC
Band lengths:
143-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]