RnoEX6015473 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173802633-173816463:+
Coord C1 exon
chr4:173802633-173802703
Coord A exon
chr4:173806813-173806876
Coord C2 exon
chr4:173816404-173816463
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTATCTTTGTAGACA
3' ss Score
9.7
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGGATGATGACCGCAGTCGGGTCCATCTGAACCAACTTCTAGAATTTACACATATTTGGAAAATATCCAG
Seq A exon
ACAATGCCTCTCCACAGTAATGAAAAGCTACAACCTCCATGTCGAGCACCTGTTGAAAACCCAG
Seq C2 exon
GAAGATGTGGAGGAGAAACCTCTGTCATCCATGTTTTCCTGTGGCCGACACCCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228-'11-11,'11-9,12-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATGATGACCGCAGTCG
R:
GGGTGTCGGCCACAGGAAAA
Band lengths:
124-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]