BtaEX0027101 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92200029-92222093:-
Coord C1 exon
chr5:92222023-92222093
Coord A exon
chr5:92218447-92218510
Coord C2 exon
chr5:92200029-92200151
Length
64 bp
Sequences
Splice sites
3' ss Seq
AAGCTCTTTTTTCTTTCCAGACA
3' ss Score
7.7
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
CATGAAGATGACCACAGTCAGTTTTATCTGAACCAACTTCTAGAATTTATGCATATCTGGAAAGTATCCAG
Seq A exon
ACAGTGTCTCTCAACAGTAATCCAAAAATATGACTCCCACCTGAAATACTTATTGAAAACTCAG
Seq C2 exon
CAAAATGTGGACAATGTTATTGAAGAAGTAAAAAGTATATGCAGTGTTCTGGGATGTGTGGAGACCAAACAAATTACAGATGCTATAAATGAACTAAATCTTATTCTTCAGAGAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAGTCAGTTTTATCTGAACCA
R:
TGTTTGGTCTCCACACATCCC
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development