BtaEX0027100 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92218447-92227160:-
Coord C1 exon
chr5:92227058-92227160
Coord A exon
chr5:92222023-92222093
Coord C2 exon
chr5:92218447-92218510
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATATATCCTGCTATCTACAGCAT
3' ss Score
6.42
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGATCACTATTTGGGAAGCCACAGAGTATTTCAGAAAAATAAATCTGTTATTCAACTTCATCTACAGAAAAAGAGAGACACTCCAGGAACATTATCTCGAAAG
Seq A exon
CATGAAGATGACCACAGTCAGTTTTATCTGAACCAACTTCTAGAATTTATGCATATCTGGAAAGTATCCAG
Seq C2 exon
ACAGTGTCTCTCAACAGTAATCCAAAAATATGACTCCCACCTGAAATACTTATTGAAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(26.5=74.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCACTATTTGGGAAGCCACA
R:
TCAATAAGTATTTCAGGTGGGAGTCA
Band lengths:
159-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development