HsaEX6065388 @ hg19
Exon Skipping
Gene
ENSG00000139144 | PIK3C2G
Description
phosphoinositide-3-kinase, class 2, gamma polypeptide [Source:HGNC Symbol;Acc:8973]
Coordinates
chr12:18466896-18478032:+
Coord C1 exon
chr12:18466896-18466998
Coord A exon
chr12:18473896-18473966
Coord C2 exon
chr12:18477969-18478032
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATATATTCTGCTGTCTACAGCAT
3' ss Score
7
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CGACCACTGTTTGGGGAGCCACAAAATGTTTCAAAAAGATAAATCTGTTATTCAGCTCCACCTGCAGAAAAGTAGGGAAGCTCCAGGAAAGCTATCTCGAAAG
Seq A exon
CATGAAGAGGACCACAGTCAGTTTTATCTGAATCAACTTCTAGAATTTATGCATATTTGGAAAGTATCCAG
Seq C2 exon
ACAATGTCTCTTAACACTCATCAGAAAATATGACTTCCACCTGAAATACCTATTGAAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(26.5=74.3),PF0027315=Serum_albumin=FE(24.5=100)
A:
PF0027315=Serum_albumin=FE(16.5=100)
C2:
PF0027315=Serum_albumin=FE(15.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTTTGGGGAGCCACAAA
R:
GGGTTTTCAATAGGTATTTCAGGTGG
Band lengths:
161-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)