HsaEX6065388 @ hg38
Exon Skipping
Gene
ENSG00000139144 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr12:18313962-18338548:+
Coord C1 exon
chr12:18313962-18314064
Coord A exon
chr12:18320962-18321032
Coord C2 exon
chr12:18338426-18338548
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATATATTCTGCTGTCTACAGCAT
3' ss Score
7
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CGACCACTGTTTGGGGAGCCACAAAATGTTTCAAAAAGATAAATCTGTTATTCAGCTCCACCTGCAGAAAAGTAGGGAAGCTCCAGGAAAGCTATCTCGAAAG
Seq A exon
CATGAAGAGGACCACAGTCAGTTTTATCTGAATCAACTTCTAGAATTTATGCATATTTGGAAAGTATCCAG
Seq C2 exon
GAAAACGTGTATAATATTATTGAAGAAGTTAAAAAAATATGCAGTGTTCTAGGGTGTGTGGAAACCAAACAAATTACAGATGCAGTAAATGAACTAAGTCTAATTCTTCAGAGAAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144_MULTIEX2-3/4=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(26.5=74.3)
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000538779fB22560
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTTTGGGGAGCCACAAA
R:
TGTTTGGTTTCCACACACCCT
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains