RnoEX0065960 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173794704-173806876:+
Coord C1 exon
chr4:173794704-173794806
Coord A exon
chr4:173802633-173802703
Coord C2 exon
chr4:173806813-173806876
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATACATTCCACTCTCTGCAGAGG
3' ss Score
6.98
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGATCACTGTCTAGGGAGCCACAAAATATTTCAGAAAAGTAAATCTGTCATTCAACTCCATCTCCAGAGAAGCAGGGACACTCCAGGAAAATTATCCCGGAAG
Seq A exon
AGGGATGATGACCGCAGTCGGGTCCATCTGAACCAACTTCTAGAATTTACACATATTTGGAAAATATCCAG
Seq C2 exon
ACAATGCCTCTCCACAGTAATGAAAAGCTACAACCTCCATGTCGAGCACCTGTTGAAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(27.1=74.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGTCTAGGGAGCCACAA
R:
GGGTTTTCAACAGGTGCTCGA
Band lengths:
162-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]