DreEX6067012 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50918171-50918604:-
Coord C1 exon
chr18:50918493-50918604
Coord A exon
chr18:50918349-50918413
Coord C2 exon
chr18:50918171-50918234
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACGGTGTTCTGTGTCTGCAGGAG
3' ss Score
9.9
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
TGATGAAGTATTGGGCTATCATGAGTGCATCCAGGCGTATCACAGGTTTTCTGCTGATGTTCCTGTGCGTTTGGTGCTCAGAGACTCCATCAGGAAAACCCTCAGTCCAGAC
Seq A exon
GAGGAAGACCATGAGCAGAGCCTCCATTACAGTCAGGTGCTGCAGTCTGCCTCCAACCACATCAG
Seq C2 exon
GTGGAGTCTGCAGGAGAAACTGGACGTCTACAGCAGTGCAGTGACCCGGCTGATGAGAAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATTGGGCTATCATGAGTGCA
R:
GTTTCTCATCAGCCGGGTCAC
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]