GgaEX6002847 @ galGal4
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64155475-64166867:+
Coord C1 exon
chr1:64155475-64155577
Coord A exon
chr1:64161474-64161544
Coord C2 exon
chr1:64166804-64166867
Length
71 bp
Sequences
Splice sites
3' ss Seq
TATATGCTTCTCTGTCACAGCAC
3' ss Score
7.57
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
CAATCATAGTTTGGGCAACCACGAGAGTCTTCGCAAGGCAACCACTGACATTCATCTTCATCTACACAGCACTACAAATTTGAAGCAAAGTTTGGCTCGAGTG
Seq A exon
CACGAGGATGACCAAGGACGGTTCAGTGTGAATGAGCTGTTAGAATATACTTGTGCTTGGAGACTGACTCG
Seq C2 exon
ACAGAACCTTTTCGCAGCTCTTAGGAAATACAGAGGTCAAGTGGAGCACCTTTTGCAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(26.8=74.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAGTCTTCGCAAGGCAA
R:
AAGGTGCTCCACTTGACCTCT
Band lengths:
135-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]