HsaEX6066852 @ hg19
Exon Skipping
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:792]
Coordinates
chr12:53905845-53918545:-
Coord C1 exon
chr12:53918348-53918545
Coord A exon
chr12:53917060-53917168
Coord C2 exon
chr12:53905845-53911138
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCCTCCCTCCTCAGAAT
3' ss Score
12.24
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTCTCACCAGCTCAGCCCACCCCTAGTACTGGGGGGCGACGGCGGCGCACAGTAGATGAAGATCCAGATGAGCGACGGCAGCGCTTTCTGGAGCGCAACCGGGCTGCAGCCTCCCGCTGCCGCCAAAAGCGAAAGCTGTGGGTGTCCTCCCTAGAGAAGAAGGCCGAAGAACTCACTTCTCAGAACATTCAGCTGAGT
Seq A exon
AATGAAGTCACATTACTACGCAATGAGGTGGCCCAGTTGAAACAGCTACTGTTAGCTCATAAAGACTGCCCAGTCACTGCACTACAGAAAAAGACTCAAGGCTATTTAG
Seq C2 exon
AAAGCCCCAAGGAAAGCTCAGAGCCAACGGGTTCTCCAGCCCCTGTGATTCAGCACAGCTCAGCAACAGCCCCTAGCAATGGCCTCAGTGTTCGCTCTGCAGCTGAAGCTGTGGCCACCTCGGTCCTCACTCAGATGGCCAGCCAAAGGACAGAACTGAGCATGCCGATACAATCGCATGTAATCATGACCCCACAGTCCCAGTCTGCGGGCAGATGATGCCTCCTCTGGTGGAGAGGTCCTCAGCCAGAGCTCGCCCGCCCAAGAGCCAAGAGAGATGTCATCTTATCCCCTCCCATCTGCCTTGGACATGGCAATATGGGTGGGGGGAATTGTGTGTTGTGAGTAATGGACAGATATGGGGCTTTTTAGCCATGTGGTCATGTACGTTTGACACCTGTGCTGGGGGCCTCCCAGCCCCGGAGCCTCATAGATCATCCCCCAGGGTGGGGTTTCTGATGCATCCACAGCCAAAGGCCTTTCCAGATGGTCCGAACAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.324 C2=0.792
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.3=68.2)
A:
PF0017016=bZIP_1=PD(26.6=45.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCCCACCCCTAGTACTG
R:
TGTTGCTGAGCTGTGCTGAAT
Band lengths:
256-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)