DreEX0015447 @ danRer10
Exon Skipping
Gene
ENSDARG00000011298 | atf7a
Description
activating transcription factor 7a [Source:ZFIN;Acc:ZDB-GENE-050721-2]
Coordinates
chr23:27520388-27526458:-
Coord C1 exon
chr23:27526270-27526458
Coord A exon
chr23:27521561-27521666
Coord C2 exon
chr23:27520388-27521488
Length
106 bp
Sequences
Splice sites
3' ss Seq
CCTATATTTGTGTGTACAAGAAC
3' ss Score
1.99
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTGTCTCCCGCTCAGCCCACCGGGGGTCGCAGGCGGAGGACGGCTGATGATGACCCCGATGAGAGGAGGCAACGCTTTCTGGAGCGCAACAGGGCAGCGGCTTCACGTTGCAGGCAGAAACGCAAGATATGGGTGAACTCTCTGGAGAAAAAAGCTGAGGAGCTCACCTCCATCAACGTCTCGCTTTCG
Seq A exon
AACGAGGTGTCTCACCTACGAAACGAAGTTGCTCATCTAAAGCAGTTGCTGTTAGCCCATAAAGACTGTCCTGTCACCAACCTCCAGAAGAAAGCTGCCTATTTAG
Seq C2 exon
GAGACGAGCACATGAAAGAGACATCCGAACCCACGGGCTCCCCAGCGCCGGTCATCCAGCACAGCTCTCTGGCCCCCAGCCCCTCGTCTGTAGTGGGACCCAATGGCCTGAGCTCTCGTGCTGCGGCTGAAGCAGTGGCCATGTCGGTGCTGGCAGGAATGGGCAGCCAGCAGGGTGGCAGTGGCGGCCCATCACACGTCATCATGGCCACACAATCCCACCCGTCCAGCAGATGATGAGAACCTGCATGAGACTCTCCACATCCTGGGAGAGAGGAGAACACACTCCCTCTTGCGCCTGGAGCTCAGCTGCATTCTGGGAATGAAACTGGGACTATTGTACACATACCCACACACACACAAACACAAACAAAATAAGAAACAAAGACGGAAGGAGATGGTCGTTCACTATGCCATAGACTACGGGGACTGGACTCCAATCCTGCTCTCTTTCGCATCCTCTGCTCCTTCCTTCAACCTCCTCCTGCTCCTCCACTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011298-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.687 A=0.583 C2=0.897
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.3=71.4)
A:
PF0017016=bZIP_1=PD(26.6=47.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCAACGTCTCGCTTTCG
R:
GTGGGATTGTGTGGCCATGAT
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]