RnoEX0012560 @ rn6
Exon Skipping
Gene
ENSRNOG00000015269 | Atf7
Description
activating transcription factor 7 [Source:RGD Symbol;Acc:1304940]
Coordinates
chr7:144136325-144144417:-
Coord C1 exon
chr7:144144220-144144417
Coord A exon
chr7:144140923-144141031
Coord C2 exon
chr7:144136325-144137193
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTACTTCTCTCTCTCTTTAGAAT
3' ss Score
12.78
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGTCTCCAGCTCAGCCCACCCCTAGCACAGGGGGACGGCGTCGGCGCACAGTGGATGAAGATCCAGATGAGCGGCGGCAGCGATTTTTAGAGCGGAACAGAGCTGCAGCCTCCCGATGCCGCCAAAAGCGAAAGCTGTGGGTCTCCTCCCTGGAAAAGAAGGCAGAAGAACTTACTTCTCAGAACATTCAGCTGAGT
Seq A exon
AATGAAGTCACATTACTACGCAATGAGGTGGCTCAGTTGAAACAGCTACTGTTAGCTCATAAAGACTGCCCAGTCACTGCACTACAGAAAAAGACTCAAGGCTACCTAG
Seq C2 exon
AAAGTCCCAAGGAAAGCTCAGAGCCAACGGGTTCTCCAGCCCCAGTGATTCAGCACAGTTCCGCAACAGCCCCTAGCAATGGCCTTAGTGTTCGATCTGCAGCTGAAGCTGTGGCCACCTCGGTCCTCACTCAGATGGCCAGCCAAAGGACAGAACTGAGCATGCCCATACAGTCACATGTGATCATGACCCCACAGTCACAGTCTGCGGGCAGATGATGCCTCCCATGATGGAGAGGTCCCCAGCCAGAGCTCGCCAGCCTGAGCCAAAAGAGAGATCAACTTATCCCTCCTGTCTGCCTTGGAATTGGCAGTATGGAGAGGGAGAAATTGTGTGTTGTGAGTATGGACAGATGTGGGGCTTTTCTCTTTAGCCACATGATCATGTACAATTAACACCTGTACAACGGGCTTTTGGCCCCAAAGCCACATAGATCATCCCCCAAGGGTAGGGTTTCTTATGATCCTACAACCAAAGGCCTTTCCACATGGTCTGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015269-'17-15,'17-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=0.297 C2=0.792
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.3=68.2)
A:
PF0017016=bZIP_1=PD(26.6=45.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCCTGGAAAAGAAGGCA
R:
ACTGTGACTGTGGGGTCATGA
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]