BtaEX6020296 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005863 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr5:26664732-26671702:+
Coord C1 exon
chr5:26664732-26664929
Coord A exon
chr5:26666202-26666310
Coord C2 exon
chr5:26670821-26671702
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTCTTACCTTTCTCCTCAGAAT
3' ss Score
10.5
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTCTCACCAGCCCAACCCACTCCTAGTACTGGAGGTCGACGTCGGCGCACGGTTGATGAAGATCCAGATGAGCGGCGACAGCGCTTTCTGGAGCGCAACCGGGCTGCAGCCTCCCGCTGCCGTCAAAAGCGGAAGCTGTGGGTGTCCTCCCTAGAGAAGAAGGCTGAGGAACTCACTTCTCAGAACATTCAGCTGAGT
Seq A exon
AATGAAGTCACATTACTACGCAATGAGGTGGCTCAGTTGAAACAGCTACTGTTAGCTCATAAAGACTGCCCAGTCACAGCACTACAGAAAAAGACTCAAGGCTATTTAG
Seq C2 exon
AAAGCCCCAAGGAAAGCTCAGAGCCAACGGGTTCACCAGCCCCTGTGATTCAACACAGCTCAGCAACAGCCCCGAGCAACGGCCTCAGTGTTCGCTCTGCAGCCGAAGCTGTGGCCACCTCAGTGCTCACTCAAATGGCCAGCCAAAGGACAGAACTGGGCATGCCCATACAGTCGCATGTGATCATGACCCCACAGTCTCAGTCTGCGGGCAGATGATGCCTCCCCTGGTGGAGGGGTCCCCAGCCAGAGCTCGCCCGCCCAAGAGTCAAGAGAGACGTCATCTTATGCTCTCCCGTCTGCCTTGGACACGGCAATATGGGGGAGGGAATTGCGTGTTGTGAGTAATGGTCAGATGTGGGGCTTTTCTCACACAGTCATGTACGTTGACACCTGTACTAGGAGCCTCCCAGCCCCAGAGCCACATAGATCATTCCCCAAGAGGGAAGTTTCTGATGTACCCACAGCCAGAGGCCTTTATGGATGGTCTGAACAATCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005863-'19-14,'19-13,20-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=0.297 C2=0.819
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.3=68.2)
A:
PF0017016=bZIP_1=PD(26.6=45.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAACCCACTCCTAGTACT
R:
TGTGTTGAATCACAGGGGCTG
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]