HsaEX6075596 @ hg19
Exon Skipping
Gene
ENSG00000187720 | THSD4
Description
thrombospondin, type I, domain containing 4 [Source:HGNC Symbol;Acc:25835]
Coordinates
chr15:71839575-72021063:+
Coord C1 exon
chr15:71839575-71839820
Coord A exon
chr15:71952869-71953073
Coord C2 exon
chr15:72020888-72021063
Length
205 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTGTCTTTTTGCAGAGC
3' ss Score
12.48
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
AGAACAGAGGCTGAGCTCGAAGCGCCGGGCAGTACAGTGAGGGAGAGCCGAGGGAACCAGCGCGGTGCCTAGCGGAACTCCAGGGCTGGAATCCCGAGACACAAGTGCATCTGCTAGCTGTTAGCACTTGGCAGACGGAGTTCTCCTCTAGGGTAGTTCTAACTTTGGGTAATAATGTTTGTCAGCTACCTGATATTAACATTGCTCCACGTTCAAACAGCAGTGTTAGCAAGACCTGGGGGAGAG
Seq A exon
AGCATTGGCTGTGATGACTACTTAGGCTCCGACAAAGTCGTGGACAAATGTGGGGTGTGTGGAGGAGACAACACGGGCTGTCAGGTTGTGTCGGGCGTGTTTAAGCATGCCCTCACCAGCCTGGGCTACCACCGCGTCGTGGAGATTCCCGAGGGAGCCACGAAAATCAACATCACGGAGATGTACAAGAGCAACAACTATTTGG
Seq C2 exon
CCCTGAGAAGTCGTTCTGGACGCTCCATCATCAATGGGAACTGGGCAATTGATCGACCAGGAAAATACGAGGGCGGAGGGACCATGTTCACCTACAAGCGTCCAAATGAGATTTCGAGCACTGCCGGAGAGTCCTTTTTGGCGGAAGGTCCCACCAACGAGATCTTGGATGTCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187720-'13-17,'13-16,18-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.345
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(35.0=59.4)
C2:
PF059869=ADAM_spacer1=FE(49.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAGAGGCTGAGCTCGAA
R:
CGATCAATTGCCCAGTTCCCA
Band lengths:
301-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)