RnoEX0004010 @ rn6
Exon Skipping
Gene
ENSRNOG00000051221 | AABR07070310.1
Description
NA
Coordinates
chr8:64855071-65119872:-
Coord C1 exon
chr8:65119772-65119872
Coord A exon
chr8:64913477-64913681
Coord C2 exon
chr8:64855071-64855246
Length
205 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCTCTCTTTTTGCAGAGC
3' ss Score
12.9
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CAACCGGCTACCGCTTCTACGTCCGACAGGCTGAGAGGGTCATTGACGGCACACCCTGTGACCAGAACGGCACGGCAATCTGCGTGTCGGGGCAGTGCAAG
Seq A exon
AGCATCGGCTGTGATGACTTCCTGGGATCTGACAAAGTCGTGGACAAGTGTGGGGTGTGCGGCGGTGATAACACGGGCTGCCAGGTGGTGTCAGGCGTGTTTAAGCATGCCCTCACCAGCCTGGGCTACCACCGGGTTGTAGAGATTCCCCAAGGAGCCACAAAAATTAACATTACGGAAATGCACAAGAGCAACAACTACTTGG
Seq C2 exon
CCTTGCGAAGTCGCTCTGGCCGCTCCATCATCAATGGGAACTGGGCAATCGATCGCCCCGGGAAGTACGAGGGCGGAGGGACAATGTTCACCTACAAGCGACCGAACGAGATCTCCAGCACTGCCGGGGAGTCCTTTTTGGCTGAAGGTCCCACTAATGAGATCCTGGATGTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051221-'0-6,'0-2,4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGGCTACCGCTTCTAC
R:
TAGACATCCAGGATCTCATTAGTGGG
Band lengths:
276-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]