HsaEX6079656 @ hg19
Exon Skipping
Gene
ENSG00000104760 | FGL1
Description
fibrinogen-like 1 [Source:HGNC Symbol;Acc:3695]
Coordinates
chr8:17726057-17731625:-
Coord C1 exon
chr8:17731528-17731625
Coord A exon
chr8:17726425-17726513
Coord C2 exon
chr8:17726057-17726244
Length
89 bp
Sequences
Splice sites
3' ss Seq
ATTGCTTGTTTCTTTTTTAGAAG
3' ss Score
9.18
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
AGGATGGAAAGACTATGAAAATGGCTTTGGAAATTTTGTCCAAAAACATGGTGAATATTGGCTGGGCAATAAAAATCTTCACTTCTTGACCACTCAAG
Seq A exon
AAGACTACACTTTAAAAATCGACCTTGCAGATTTTGAAAAAAATAGCCGTTATGCACAATATAAGAATTTCAAAGTTGGAGATGAAAAG
Seq C2 exon
AATTTCTACGAGTTGAATATTGGGGAATATTCTGGAACAGCTGGAGATTCCCTTGCGGGGAATTTTCATCCTGAGGTGCAGTGGTGGGCTAGTCACCAAAGAATGAAATTCAGCACGTGGGACAGAGATCATGACAACTATGAAGGGAACTGCGCAGAAGAAGATCAGTCTGGCTGGTGGTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104760-'12-19,'12-18,13-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.5=100)
A:
PF0014713=Fibrinogen_C=FE(12.8=100)
C2:
PF0014713=Fibrinogen_C=FE(27.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAATATTGGCTGGGCAA
R:
CATGATCTCTGTCCCACGTGC
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)