GgaEX6035365 @ galGal4
Exon Skipping
Gene
ENSGALG00000013606 | FGL1
Description
Gallus gallus fibrinogen-like 1 (FGL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001277819]
Coordinates
chr4:62474293-62476375:+
Coord C1 exon
chr4:62474293-62474390
Coord A exon
chr4:62475550-62475638
Coord C2 exon
chr4:62476188-62476375
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTCTATTGTTATTTCTTAAGGAA
3' ss Score
6.88
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AGACTGGACTGACTATGAAGAAGGCTTTGGAAATTTTGTTTTGACTAATGGTGAATATTGGCTTGGAAATAAGAACCTTCATTACTTGACTAATCAAG
Seq A exon
GAAACTATACTTTAAGAATTGATCTAAGTGATTTTGAAGGAGAACGGCGTTATGCACAATATACAAGATTTGGAGTTGCAGATGAAGAG
Seq C2 exon
CACTCCTATCAGATGAGCTGTGGTGAATACTCTGGTACAGCTGGTGATTCCCTAACTGGGGGATTTCATCCTGAAGTAAAATGGTGGGCTGATCATTGCGGAATGAAATTCAGTACTAGAGACAGGGACAATGACAACTATGAAGGCAACTGTGCTGAAGAGGAAAAGGCTGGCTGGTGGTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013606-'9-8,'9-6,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.5=100)
A:
PF0014713=Fibrinogen_C=FE(12.8=100)
C2:
PF0014713=Fibrinogen_C=FE(27.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTGACTATGAAGAAGGCT
R:
GCCCACCATTTTACTTCAGGA
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]