MmuEX1010444 @ mm10
Exon Skipping
Gene
ENSMUSG00000031594 | Fgl1
Description
fibrinogen-like protein 1 [Source:MGI Symbol;Acc:MGI:102795]
Coordinates
chr8:41191434-41199749:-
Coord C1 exon
chr8:41199652-41199749
Coord A exon
chr8:41197314-41197402
Coord C2 exon
chr8:41191434-41191680
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTGTTTTAGGAG
3' ss Score
11.73
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGGTTGGAATGACTATGAAAATGGCTTTGGAAACTTTGTCCAAAACAATGGCGAATACTGGCTGGGTAACAAAAACATTAACTTGCTAACTATTCAAG
Seq A exon
GAGACTACACTTTAAAAATCGACCTGACAGATTTTGAGAAAAACAGCAGCTTCGCACAATACCAAAGTTTTAAAGTTGGTGATAAAAAG
Seq C2 exon
GTGTCACTCTGCAAACCTGAACGGTGTTTACTACCGTGGTTCCTACAGGGCAGAAACGGATAATGGTGTTGTGTGGTACACCTGGCATGGGTGGTGGTATTCCTTGAAATCTGTGGTTATGAAAATTAGGCCAAGTGATTTTATTCCAAATATTATTTAGTTGCCCTCATTGGGATCTCCTTTCTGTAATTCATCTTGGTTTACTTGAAAATAAATATTTGAAAAAGATATAATTCTGAATAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031594_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.5=100)
A:
PF0014713=Fibrinogen_C=FE(12.8=100)
C2:
PF0014713=Fibrinogen_C=PD(19.8=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGTCCAAAACAATGGCGA
R:
GAATACCACCACCCATGCCAG
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types