RnoEX6055651 @ rn6
Exon Skipping
Gene
ENSRNOG00000010714 | Fgl1
Description
fibrinogen-like 1 [Source:RGD Symbol;Acc:620169]
Coordinates
chr16:54173814-54188181:+
Coord C1 exon
chr16:54173814-54173973
Coord A exon
chr16:54183965-54184053
Coord C2 exon
chr16:54187888-54188181
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTGTTTGTTTTAGGAG
3' ss Score
11.58
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
ATTGTTCAGAGATTTACAATGATGGATTTAAACATAGTGGGTTTTACAAAATCAAACCTCTTCAGAGTCTGGCAGAATTCTCTGTTTATTGTGATATGTCTGATGGAGGAGGATGGACTGTAATTCAGAGACGATCTGACGGCAGTGAGAACTTTAACAG
Seq A exon
GAGACTACACTTTAAAAATCGACCTGACAGACTTTGAGAAAAACAGCCGCTTCGCACAATACGAAAAATTTAAAGTTGGCGATGAAAAG
Seq C2 exon
GTGTCACTCTGCAAACCTGAACGGCGTGTACTACCAAGGTCCCTACAGAGCAGAAACCGATAATGGTGTTGTCTGGTACACCTGGCGTGGGTGGTGGTATTCCTTGAAATCTGTGGTTATGAAAATTAGGCCCAGTGATTTTATTCCAAATATCGTTTAGTTGTCCCATTGGGATCTGCTTTCTGTGATTCATCTTGGTTTTTAAATGTTTGAAAAAAATATACAATTCTGAATAATACACTCGTGGCGATGGTGACTGTGTGTGACTTCTCGTTCTTCATACTGCCTTTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010714-'6-12,'6-8,11-12=AN
Average complexity
A_C3
Mappability confidence:
92%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(28.6=100)
A:
PF0014713=Fibrinogen_C=FE(15.7=100)
C2:
PF0014713=Fibrinogen_C=PD(19.8=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGGAGGAGGATGGACTGT
R:
CAAGGAATACCACCACCCACG
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]