DreEX6088150 @ danRer10
Exon Skipping
Gene
ENSDARG00000057004 | FGL1
Description
fibrinogen-like 1 [Source:HGNC Symbol;Acc:HGNC:3695]
Coordinates
chr10:24718534-24719077:-
Coord C1 exon
chr10:24718980-24719077
Coord A exon
chr10:24718816-24718904
Coord C2 exon
chr10:24718534-24718724
Length
89 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTAACACCCTTTAGGTG
3' ss Score
6.83
5' ss Seq
AAAGTAATG
5' ss Score
1.16
Exon sequences
Seq C1 exon
AAAGTGGGAAGATTATAAAAATGGATTTGGAAATTTTCAGTCAAGTAAAGATGAATTCTGGCTTGGGAACGATCATATTCATGTCCTTCTCAGTGATG
Seq A exon
GTGACAGTGTGATGAAAATTGATCTGACAGACTGGAAAGGAGGGAAATCATATGCCATGTATGACAACTTCAAAGTGTCAGATGAAAAA
Seq C2 exon
GATAAATACAGGCTGTACTATGGGATGTACAGTGGTCAAGCAGGAGATGCCTTGTCCGGAGGAGCCAATATGGTGGAGCAGTGGTCAGCCTCCCATAATGGCATGCAATTCAGCACCAGGGACCAAGATCATGATCGGTACCTGCAGGGAAGCTGTGCTGCAGAGAACAAGGGGGGCTGGTGGTATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057004-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.4=100)
A:
PF0014713=Fibrinogen_C=FE(12.7=100)
C2:
PF0014713=Fibrinogen_C=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTCTGGCTTGGGAACGA
R:
CATGATCTTGGTCCCTGGTGC
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]