HsaEX6079657 @ hg19
Exon Skipping
Gene
ENSG00000104760 | FGL1
Description
fibrinogen-like 1 [Source:HGNC Symbol;Acc:3695]
Coordinates
chr8:17721889-17726513:-
Coord C1 exon
chr8:17726425-17726513
Coord A exon
chr8:17726057-17726244
Coord C2 exon
chr8:17721889-17722260
Length
188 bp
Sequences
Splice sites
3' ss Seq
GAAATGCCCTTTTTCTTTAGAAT
3' ss Score
7.55
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
AAGACTACACTTTAAAAATCGACCTTGCAGATTTTGAAAAAAATAGCCGTTATGCACAATATAAGAATTTCAAAGTTGGAGATGAAAAG
Seq A exon
AATTTCTACGAGTTGAATATTGGGGAATATTCTGGAACAGCTGGAGATTCCCTTGCGGGGAATTTTCATCCTGAGGTGCAGTGGTGGGCTAGTCACCAAAGAATGAAATTCAGCACGTGGGACAGAGATCATGACAACTATGAAGGGAACTGCGCAGAAGAAGATCAGTCTGGCTGGTGGTTTAACAG
Seq C2 exon
GTGTCACTCTGCAAACCTGAATGGTGTATACTACAGCGGCCCCTACACGGCTAAAACAGACAATGGGATTGTCTGGTACACCTGGCATGGGTGGTGGTATTCTCTGAAATCTGTGGTTATGAAAATTAGGCCAAATGATTTTATTCCAAATGTAATTTAATTGCTGCTGTTGGGCTTTCGTTTCTGCAATTCAGCTTTGTTTAAAGTGATTTGAAAAATACTCATTCTGAACATATCCATGCGCAATCATGATAACTGTTGTGAGTAGTGCTTTTCATTCTTCTCACTTGCCTTTGTTACTTAATGTGCTTTCAGTACAGCAGATATGCAATATTCACCAAATAAATGTAGACTGTGTTAATATTTATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104760-'13-20,'13-19,14-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(12.8=100)
A:
PF0014713=Fibrinogen_C=FE(27.3=100)
C2:
PF0014713=Fibrinogen_C=PD(19.8=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCTTGCAGATTTTGAAAA
R:
AGAAACGAAAGCCCAACAGCA
Band lengths:
256-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)