BtaEX6106700 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016177 | FGL1
Description
Bos taurus fibrinogen-like 1 (FGL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034313]
Coordinates
chr27:18466710-18472436:+
Coord C1 exon
chr27:18466710-18466798
Coord A exon
chr27:18467067-18467254
Coord C2 exon
chr27:18472277-18472436
Length
188 bp
Sequences
Splice sites
3' ss Seq
AATCGCCTCTTTTTCTTTAGAAT
3' ss Score
9.68
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
GAGATTACACATTAAAAATCGACCTTGCAGATTTTGAGAAAAATAGCCGTTATGCTCAATATAAAAATTTCAAAGTTGGAGATGAAAAG
Seq A exon
AATTCCTATGATTTACATATTGGGGAATATTCTGGAACCGCTGGAGACTCCCTTACTGGAAATTTTCATCCTGAAGTGCAATGGTGGGCCAGTCACCAAAGAATGAAATTCAGCACGTGGGACAGAGACAACGACAACTACGAAGGGAACTGTGCGAAAGAGGATCAGTCTGGCTGGTGGTTTAACAG
Seq C2 exon
GTGTCACTCTGCAAACCTGAATGGCTTCTACCACAAGGGTCCCTACACCGCTAAAACGGACAATGGGATTGTCTGGCACACCTGGCATGGATGGTGGTATTCCTTGAAATCTGTGGTTATGAAAATTAGGCCAAATGATTTCATTCCAAATATTGTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016177-'7-12,'7-9,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(12.8=100)
A:
PF0014713=Fibrinogen_C=FE(27.3=100)
C2:
PF0014713=Fibrinogen_C=PD(19.8=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACATTAAAAATCGACCTTGCAGA
R:
ATTTGGAATGAAATCATTTGGCCT
Band lengths:
234-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]