DreEX6088151 @ danRer10
Exon Skipping
Gene
ENSDARG00000057004 | FGL1
Description
fibrinogen-like 1 [Source:HGNC Symbol;Acc:HGNC:3695]
Coordinates
chr10:24717448-24718904:-
Coord C1 exon
chr10:24718816-24718904
Coord A exon
chr10:24718534-24718724
Coord C2 exon
chr10:24717448-24717906
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCTGCTCACTATAGGAT
3' ss Score
9.24
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTGACAGTGTGATGAAAATTGATCTGACAGACTGGAAAGGAGGGAAATCATATGCCATGTATGACAACTTCAAAGTGTCAGATGAAAAA
Seq A exon
GATAAATACAGGCTGTACTATGGGATGTACAGTGGTCAAGCAGGAGATGCCTTGTCCGGAGGAGCCAATATGGTGGAGCAGTGGTCAGCCTCCCATAATGGCATGCAATTCAGCACCAGGGACCAAGATCATGATCGGTACCTGCAGGGAAGCTGTGCTGCAGAGAACAAGGGGGGCTGGTGGTATAACAG
Seq C2 exon
GTGTCATGCTGCCAATCTTAATGGGAGATTTTACAGAGGTGGAGAGTACAAGGCCAAATATGACAATGGTATTGTTTGGAGCACCTGGAAAGGACTGTGGTACTCCCTCAGACACACAGTCATGAAGGTCCGGCCCAGCTCCCACATGGACAGCGTGGGTAGTGGAGGAGGGCCCACTGAATAGCGAGGTTGCTAAGCATCTTGTTATACACATTTGTGAATTATACTGTGTTAACTATAAGATTTACTGTGGTTTATTAACTTTTCAACCACATGACTGTCGAGCATAGAAAGAATCTTGGAGGGATGAAGGAAGAAAGTAATCTTGGTAGATTTGATGAATCCACCTGTTATTTTTAAAATAATCATAAATAATATAACTTTGCATGCAGCCATATAATAGCACTTGTAGCATACAATATGCATATTACATTAAAACAGCATTTTTACATGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057004-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.230
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(12.7=100)
A:
PF0014713=Fibrinogen_C=FE(27.5=100)
C2:
PF0014713=Fibrinogen_C=PD(20.1=74.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGACTGGAAAGGAGGGA
R:
CAACCTCGCTATTCAGTGGGC
Band lengths:
257-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]