GgaEX6035364 @ galGal4
Exon Skipping
Gene
ENSGALG00000013606 | FGL1
Description
Gallus gallus fibrinogen-like 1 (FGL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001277819]
Coordinates
chr4:62475550-62480683:+
Coord C1 exon
chr4:62475550-62475638
Coord A exon
chr4:62476188-62476375
Coord C2 exon
chr4:62480171-62480683
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTCTTCACAATTTTCATTAGCAC
3' ss Score
3.25
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GAAACTATACTTTAAGAATTGATCTAAGTGATTTTGAAGGAGAACGGCGTTATGCACAATATACAAGATTTGGAGTTGCAGATGAAGAG
Seq A exon
CACTCCTATCAGATGAGCTGTGGTGAATACTCTGGTACAGCTGGTGATTCCCTAACTGGGGGATTTCATCCTGAAGTAAAATGGTGGGCTGATCATTGCGGAATGAAATTCAGTACTAGAGACAGGGACAATGACAACTATGAAGGCAACTGTGCTGAAGAGGAAAAGGCTGGCTGGTGGTTTAACAG
Seq C2 exon
GTGTCACTCAGCCAACTTGAATGGTTTGTACTACAAAGGCCCTTATACTGCAAAGACAGACAATGGCGTAGTTTGGTATACTTGGCATGGGTGGTGGTATTCTCTGAAATCTGTTGTAATGAAGGTCAGACCAGCACACTTCAAACCTAATATTGTTTGAATATTTTATTAAGGTTTATCTTTTAGCAAATCAATCCAAAGTAAAACAGATGGGCTATTATCTACGTCTATATAAATCTAGAGTAACTCCTCTATATTTAATAGTTTTCTGAGCTGTAAATGAGAAGATAATCTGGTTTATGAATCCATATGAACAAGTACTACTGCTAATGTGTCTAGAGGATTTTTTTAAGGCACAGTTTGCCTAGGAGAAAGGATATCTTTATCAACATGGAGAATTTGTCTTGAAAGGTAACTAGAAATCCTTTTACTTAATAGAAAAAAATGTATTGTCACTTATGTCTCAAAAATTATTATGAATTGTATTGCACCCAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013606-'10-10,'10-8,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(12.8=100)
A:
PF0014713=Fibrinogen_C=FE(27.3=100)
C2:
PF0014713=Fibrinogen_C=PD(19.8=83.3)
Main Skipping Isoform:
ENSGALT00000022137fB7614
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGATTTGGAGTTGCAGATGA
R:
AGCCCATCTGTTTTACTTTGGA
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]