MmuEX0019197 @ mm9
Exon Skipping
Gene
ENSMUSG00000031594 | Fgl1
Description
fibrinogen-like protein 1 [Source:MGI Symbol;Acc:MGI:102795]
Coordinates
chr8:42276788-42282756:-
Coord C1 exon
chr8:42282668-42282756
Coord A exon
chr8:42282312-42282499
Coord C2 exon
chr8:42276788-42277034
Length
188 bp
Sequences
Splice sites
3' ss Seq
TGACTCCTTTTTTCCTTTAGTCT
3' ss Score
9
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
GAGACTACACTTTAAAAATCGACCTGACAGATTTTGAGAAAAACAGCAGCTTCGCACAATACCAAAGTTTTAAAGTTGGTGATAAAAAG
Seq A exon
TCTTTTTATGAACTAAATATTGGAGAATATTCTGGCACAGCTGGAGATTCCCTGTCAGGAACTTTTCATCCTGAAGTACAGTGGTGGGCTAGTCACCAAAGGATGAAGTTCAGCACGTGGGACAGAGATAACGACAATTACCAAGGAAACTGTGCTGAGGAAGAGCAGTCTGGCTGGTGGTTTAACAG
Seq C2 exon
GTGTCACTCTGCAAACCTGAACGGTGTTTACTACCGTGGTTCCTACAGGGCAGAAACGGATAATGGTGTTGTGTGGTACACCTGGCATGGGTGGTGGTATTCCTTGAAATCTGTGGTTATGAAAATTAGGCCAAGTGATTTTATTCCAAATATTATTTAGTTGCCCTCATTGGGATCTCCTTTCTGTAATTCATCTTGGTTTACTTGAAAATAAATATTTGAAAAAGATATAATTCTGAATAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031594_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(12.8=100)
A:
PF0014713=Fibrinogen_C=FE(27.3=100)
C2:
PF0014713=Fibrinogen_C=PD(19.8=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAAAACAGCAGCTTCGC
R:
ACAGAAAGGAGATCCCAATGAGG
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: